Last updated: 2024-09-02
Checks: 1 1
Knit directory: duplex_sequencing_screen/
This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
The R Markdown is untracked by Git. To know which version of the R
Markdown file created these results, you’ll want to first commit it to
the Git repo. If you’re still working on the analysis, you can ignore
this warning. When you’re finished, you can run
wflow_publish
to commit the R Markdown file and build the
HTML.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version b998df6. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for
the analysis have been committed to Git prior to generating the results
(you can use wflow_publish
or
wflow_git_commit
). workflowr only checks the R Markdown
file, but you know if there are other scripts or data files that it
depends on. Below is the status of the Git repository when the results
were generated:
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Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
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analyses in which we compared base editing and saturating mutagenesis
data on ABL. This is followed by analysis in which we decide on filter
cutoffs for enrichment scores to detect signficantly depleting mutants
that drop out for IL3 independence in BaF3s.
Click here to view
analyses in which we predicted admixtures of mutants made by sgRNAs in
Base Editing Screens. We then used the saturating mutagenesis data to
predict the fitness of these sgRNAs.