Homepage Spike In Mutants

workflowr

• Summary
• Checks
• Past versions

Last updated: 2024-10-14

Checks: 6 1

Knit directory: duplex_sequencing_screen/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

---

R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20200402)

The command set.seed(20200402) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Repository version: 5eba7e0

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 5eba7e0. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    code/archive/
    Ignored:    data/Consensus_Data/.Rhistory
    Ignored:    data/Consensus_Data/Novogene_lane11/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane11/sample1/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane11/sample2/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane11/sample3/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane11/sample4/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane11/sample7/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane12/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane12/sample1/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane13/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane13/sample1/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane13/sample10/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane13/sample11/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane13/sample12/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane13/sample7/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane13/sample8/variant_caller_outputs/
    Ignored:    data/Consensus_Data/Novogene_lane13/sample9/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane14/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane14/sample10_combined/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane14/sample11/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane14/sample12/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane14/sample13/
    Ignored:    data/Consensus_Data/Novogene_lane14/sample14_combined/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane14/sample14b/
    Ignored:    data/Consensus_Data/Novogene_lane14/sample15/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane14/sample16/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane14/sample17/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane14/sample18/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane14/sample1_combined/
    Ignored:    data/Consensus_Data/Novogene_lane14/sample7/variant_caller_outputs/duplex/
    Ignored:    data/Consensus_Data/Novogene_lane14/sample8/variant_caller_outputs/
    Ignored:    data/Consensus_Data/Novogene_lane14/sample9/.DS_Store
    Ignored:    data/Consensus_Data/Novogene_lane2/
    Ignored:    data/Consensus_Data/Novogene_lane3/
    Ignored:    data/Consensus_Data/Novogene_lane4/
    Ignored:    data/Consensus_Data/Novogene_lane5/
    Ignored:    data/Consensus_Data/Novogene_lane6/
    Ignored:    data/Consensus_Data/Novogene_lane7/
    Ignored:    data/Consensus_Data/R01Figure/.DS_Store
    Ignored:    data/Consensus_Data/Ranomics_Pooled/
    Ignored:    data/Consensus_Data/archive/
    Ignored:    data/Consensus_Data/novogene_lane15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/egfr/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/egfr/sample_1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/egfr/sample_1/firstrun(lowsequencing)/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/egfr/sample_1/firstrun(lowsequencing)/sscs/
    Ignored:    data/Consensus_Data/novogene_lane15/egfr/sample_1/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/egfr/sample_2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/egfr/sample_2/firstrun(lowsequencing)/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/egfr/sample_2/firstrun(lowsequencing)/sscs/
    Ignored:    data/Consensus_Data/novogene_lane15/egfr/sample_2/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/egfr/sample_2/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_3/firstrun(lowsequencing)/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_3/firstrun(lowsequencing)/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_3/ngs/Sample3_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_3/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_4/firstrun(lowsequencing)/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_4/firstrun(lowsequencing)/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_4/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_5/firstrun(lowsequencing)/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_5/firstrun(lowsequencing)/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_5/firstrun(lowsequencing)/sscs/variant_caller_outputs/.empty/
    Ignored:    data/Consensus_Data/novogene_lane15/sample_5/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_6/firstrun(lowsequencing)/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_6/firstrun(lowsequencing)/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_6/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_6/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_7/firstrun(lowsequencing)/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_7/firstrun(lowsequencing)/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane15/sample_7/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane15/sample_7/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample10/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample11/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample12/sscs/
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample13/sscs/
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample14/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample1_combined/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample1_combined/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample3/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample4/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample5/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample6/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample7/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample8/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16a/Sample9/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane16a/duplex/
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample11/
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample1_combined/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample7_combined/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample8_combined/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample8_combined/sscs/variant_caller_outputs/archive/
    Ignored:    data/Consensus_Data/novogene_lane16b/Sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample10/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane17/sample10/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample11/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample1_combined/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample1_combined/low_depth/duplex/low_depth/
    Ignored:    data/Consensus_Data/novogene_lane17/sample1_combined/low_depth/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample1_combined/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample2/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample3/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample4/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample5/low_seq_depth/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample5/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample6/low_seq_depths/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample6/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample7/low_seq_depths/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample7/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample8/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17/sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17/sample9/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17b/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17b/Sample1 copy 2/
    Ignored:    data/Consensus_Data/novogene_lane17b/Sample1 copy 3/
    Ignored:    data/Consensus_Data/novogene_lane17b/Sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17b/Sample1/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17b/Sample1/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane17b/Sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane17b/Sample2/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample1/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample1/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample1/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample1/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample1/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample1/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample1/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample1/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample10/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample10/ngs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample10/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample10/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample11/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample11/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample11/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample13/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample13/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample13/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample13/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample13/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample14/duplex/
    Ignored:    data/Consensus_Data/novogene_lane18/sample14/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample14/l298l/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane18/sample14/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample14/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample14/nol298l/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane18/sample14/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample15/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample15/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample15/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample15/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample16/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample16/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample16/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample16/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample17/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample18/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample18/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample18/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample18/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample18/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample18/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample18/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample18/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample18/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample2/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample2/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample2/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample3/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample3/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample3/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample3/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample4/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample4/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample4/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample4/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample4/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample4/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample5/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample5/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample5/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample6/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample6/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample6/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample6/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample9/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample9/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/sample9/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample3/duplex/
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample3/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample3/l298l/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample3/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample3/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample3/nol298l/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample3/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample3/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample5/duplex/
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample5/l298l/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample5/nol298l/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample6/duplex/
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample6/l298l/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample6/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample6/nol298l/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample6/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane18/tlane18a_sample6/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample12/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample7/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19a_Sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample11/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample16/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19/Ln19b_Sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample11/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample2/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample2/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample3/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample5/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19a_Sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane19_20/Ln19b_Sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane22/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample1/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample6/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample7/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample7/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample8/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane22/Lane22_Sample8/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane23/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample13/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample13/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample15/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample15/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample16/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample17/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample17/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample18/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample18/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample18/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample19/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample19/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample20/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample20/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample20/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample21/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample21/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample21/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample22/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample22/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample23/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample23/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample24/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample25/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample26/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample26/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample27/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample27/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane23/Sample27/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_10/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_10/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_11/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_11/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_12/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_12/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_13/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_13/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_14/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_14/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_15/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_15/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_15/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_16/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_16/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_16/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_17/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_17/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_17/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_18/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_18/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_18/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_19/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_19/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_19/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_20/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_20/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_20/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_22/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_22/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_22/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_23/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_23/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_23/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_24/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_24/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_24/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_5/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_5/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_5/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_5/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_6/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_6/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_7/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_7/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_8/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_8/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_9/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_9/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane25a/Lane_25a_9/sscs/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane27b/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/L1D0_Sample13_combined/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/L1D0_Sample13_combined/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/L1D0_Sample13_combined/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/L2D0_Sample14_combined/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/L2D0_Sample14_combined/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample1/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample1/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample1/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample11_12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample11_12/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample11_12/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample11_12/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample11_12/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample1_2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample1_2/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample1_2/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample1_2/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample3/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane27b/sample3/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample3/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample3_4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample3_4/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample4/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample4/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample4/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample5/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample5/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample5_6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample5_6/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample5_6/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample5_6/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample6/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample7/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample7/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample7/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample7_8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample7_8/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample7_8/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample7_8/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample8/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample8/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample8/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane27b/sample9_10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample9_10/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample9_10/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane27b/sample9_10/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28a/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample1/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample1/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28a/sample1/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample10/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample10/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample11/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample11/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample12/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample12/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample14/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample16/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample16/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample16/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample17/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample17/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample17/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample18/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample18/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample18/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample19/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample2/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample2/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample20/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample20/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample20/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample21/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample21/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample21/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample22/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample23/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample24/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample7/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample8/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample9/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28a/sample9/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample10/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample10/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample11/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample11/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample12/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample12/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample13/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample13/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample14/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample14/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample15/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample15/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample16/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample16/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample16/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample17/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample17/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample17/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample18/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample18/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample18/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample19/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample19/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample19/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample20/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample20/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample20/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample21/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample21/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample21/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample22/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample22/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample22/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample23/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample23/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample23/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample24/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample24/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample24/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample9/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28b/sample9/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample1/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample1/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample10/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample10/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample10/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample10/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample11/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample11/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample11/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample11/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample12/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample12/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample12/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample12/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample13/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample13/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample13/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample14/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample14/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample14/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample15/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample15/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample15/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample16/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample16/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample16/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample16/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample17/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample17/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample17/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample17/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample17/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample18/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample18/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample18/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample18/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample18/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample19/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample19/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample19/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample19/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample2/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample2/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample2/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample20/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample20/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample20/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample20/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample21/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample21/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample21/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample21/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample21/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample22/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample22/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample22/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample22/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample23/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample23/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample23/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample23/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample23/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample24/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample24/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample24/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample24/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample3/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample3/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample3/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample4/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample4/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample4/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample5/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample5/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample5/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample6/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample6/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample6/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample7/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample7/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample7/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample8/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample8/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample8/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c/sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample9/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample9/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample9/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c/sample9/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample1/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample1/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample2/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample3/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample4/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample5/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample6/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample6/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample6/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample7/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample8/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old/sample9/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample1/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample1/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample1/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample1/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample10/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample10/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample10/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample10/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample11/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample11/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample11/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample11/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample12/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample12/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample12/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample12/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample13/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample13/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample13/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample13/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample14/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample14/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample14/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample14/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample15/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample15/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample15/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample15/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample16/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample16/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample16/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample16/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample16/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample17/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample17/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample17/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample17/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample17/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample18/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample18/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample18/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample18/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample18/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample19/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample19/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample19/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample19/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample19/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample2/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample2/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample2/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample2/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample20/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample20/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample20/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample20/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample20/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample21/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample21/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample21/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample21/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample21/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample22/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample22/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample22/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample22/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample22/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample23/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample23/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample23/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample23/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample23/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample24/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample24/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample24/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample24/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample24/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample3/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample3/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample3/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample3/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample4/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample4/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample4/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample4/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample5/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample5/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample5/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample5/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample6/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample6/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample6/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample6/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample7/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample7/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample7/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample7/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample8/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample8/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample8/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample8/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample9/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample9/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample9/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_old2/sample9/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_14/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_16/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_17/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_18/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_19/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_20/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_21/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_22/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_23/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_24/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane28c_properlypaired/sample_9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/l298l/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample1/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample10/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample10/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample11/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample11/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample11/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample11/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample12/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample12/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample12/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample13/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample13/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample13/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample13/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample14/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample14/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample15/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample15/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample15/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample16/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample16/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample16/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample17/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample17/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample17/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane29a/sample17/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample18/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample18/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample18/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample18/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample19/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample19/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample19/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample2/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample2/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample2/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample2/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample2/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample2/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample2/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample2/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample2/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample20/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample20/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample20/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample21/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample21/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample21/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample3/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample4/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample5/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample6/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample6/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample7/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample7/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample8/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample8/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample9/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29a/sample9/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample1/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample10/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample10/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample10/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample11/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample11/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample11/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample2/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/nol298l/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample3/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample4/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample4/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample4/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample5/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample5/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample5/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample6/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample6/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample7/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample7/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample7/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample8/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample8/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample9/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample9/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29b/sample9/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/l298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/nol298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample19_Veri_L1_D0/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/l298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/nol298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample1_Ivan_L1_D6/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/l298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/nol298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample20_Veri_L2_D0/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/l298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/nol298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample21_Veri_L1_D14/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/l298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/nol298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample22_Veri_L2_D14/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/duplex/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/l298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/nol298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample2_Ivan_L2_D6/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/duplex/
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/l298l/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/l298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/nol298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample3_Ivan_L1_D8/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/duplex/
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/l298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/l298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/l298l/duplex/variant_caller_outputs/
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/l298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/l298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/nol298l/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/nol298l/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/nol298l/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/nol298l/sscs/sscs_sorted_filtered.tsv.gz
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/ABL/sample4_Ivan_L2_D8/sscs/variant_caller_outputs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample10_LTK_R1_Zot_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample10_LTK_R1_Zot_D6_A/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample10_LTK_R1_Zot_D6_A/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample11_LTK_R1_Zot_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample11_LTK_R1_Zot_D6_B/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample11_LTK_R1_Zot_D6_B/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample12_LTK_R2_D0/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample12_LTK_R2_D0/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample12_LTK_R2_D0/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample13_LTK_R2_ND_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample13_LTK_R2_ND_D6_A/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample13_LTK_R2_ND_D6_A/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample14_LTK_R2_ND_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample14_LTK_R2_ND_D6_B/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample15_LTK_R2_Lor_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample15_LTK_R2_Lor_D6_A/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample15_LTK_R2_Lor_D6_A/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample16_LTK_R2_Lor_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample16_LTK_R2_Lor_D6_B/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample16_LTK_R2_Lor_D6_B/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample17_LTK_R2_Zot_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample18_LTK_R2_Zot_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample5_LTK_R1_D0/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample5_LTK_R1_D0/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample5_LTK_R1_D0/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample6_LTK_R1_ND_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample6_LTK_R1_ND_D6_A/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample6_LTK_R1_ND_D6_A/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample7_LTK_R1_ND_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample7_LTK_R1_ND_D6_B/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample7_LTK_R1_ND_D6_B/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample8_LTK_R1_Lor_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample8_LTK_R1_Lor_D6_A/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample8_LTK_R1_Lor_D6_A/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample9_LTK_R1_Lor_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample9_LTK_R1_Lor_D6_B/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK/sample9_LTK_R1_Lor_D6_B/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample10_LTK_R1_Zot_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample10_LTK_R1_Zot_D6_A/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample10_LTK_R1_Zot_D6_A/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample11_LTK_R1_Zot_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample11_LTK_R1_Zot_D6_B/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample11_LTK_R1_Zot_D6_B/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample12_LTK_R2_D0/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample12_LTK_R2_D0/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample12_LTK_R2_D0/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample13_LTK_R2_ND_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample13_LTK_R2_ND_D6_A/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample13_LTK_R2_ND_D6_A/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample14_LTK_R2_ND_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample14_LTK_R2_ND_D6_B/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample15_LTK_R2_Lor_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample15_LTK_R2_Lor_D6_A/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample15_LTK_R2_Lor_D6_A/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample16_LTK_R2_Lor_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample16_LTK_R2_Lor_D6_B/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample16_LTK_R2_Lor_D6_B/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample17_LTK_R2_Zot_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample18_LTK_R2_Zot_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample5_LTK_R1_D0/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample5_LTK_R1_D0/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample5_LTK_R1_D0/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample6_LTK_R1_ND_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample6_LTK_R1_ND_D6_A/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample6_LTK_R1_ND_D6_A/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample7_LTK_R1_ND_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample7_LTK_R1_ND_D6_B/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample7_LTK_R1_ND_D6_B/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample8_LTK_R1_Lor_D6_A/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample8_LTK_R1_Lor_D6_A/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample8_LTK_R1_Lor_D6_A/sscs/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample9_LTK_R1_Lor_D6_B/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample9_LTK_R1_Lor_D6_B/duplex/.DS_Store
    Ignored:    data/Consensus_Data/novogene_lane29c/LTK_old/sample9_LTK_R1_Lor_D6_B/sscs/.DS_Store
    Ignored:    data/Consensus_Data/sscs_dcs_comparisons/
    Ignored:    data/Refs/.DS_Store
    Ignored:    data/region1234_spikein_growthrates_flowcytometry/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Ponatilink_Screens/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Ponatilink_Screens/backup_beforevariantcallerfix/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region1_Lane18_Comparisons/Lane18_Comparisons_beforejumpyvariantcaller/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region1_Lane18_Comparisons/Lane18_Comparisons_beforejumpyvariantcaller/cross-dose/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region1_Lane18_Comparisons/Lane18_Comparisons_beforejumpyvariantcaller/cross-replicate/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region1_Lane18_Comparisons/Lane18_Comparisons_beforejumpyvariantcaller/cross-species/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region1_Lane18_Comparisons/cross-dose/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region1_Lane18_Comparisons/cross-species/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region234_Comparisons/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region234_Comparisons/Attempt0_September2023_backup_ln28a/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region234_Comparisons/Attempt2_Feb2024_backup_ln192023included/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region234_Comparisons/Attempt3_3.17.24_backup_ln2728only/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region234_Comparisons/Attempt4_3.17.24_backup_ln2728only_countfiltered/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region234_Comparisons/backup_before_jumpydepths_fix_Jan2024/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region234_Comparisons/backup_before_mergesamplesfix/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region234_Comparisons/baf3_r4_IL3_low_rep1vsrep2/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region234_Comparisons/before_r4_filtering_3.24.24/.DS_Store
    Ignored:    output/ABLEnrichmentScreens/ABL_Region234_Comparisons/sm_imatinib_plots/.DS_Store
    Ignored:    output/Twinstrand/ABL1AppOutput/.DS_Store
    Ignored:    shinyapp/.DS_Store

Unstaged changes:
    Modified:   analysis/Homepage_Spike_In_Mutants.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/Homepage_Spike_In_Mutants.Rmd) and HTML (docs/Homepage_Spike_In_Mutants.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	bac3c1e	haiderinam	2024-09-02	Updated the GitHub io landing page
html	bac3c1e	haiderinam	2024-09-02	Updated the GitHub io landing page

---

• Click here for the script that reads mutation annotation data and generates dataframes with annotated variants and the correct cell counts a { display: inline-block; padding: 10px 15px; background-color: #007BFF; color: white; text-decoration: none; border-radius: 5px; font-weight: bold; transition: background-color 0.3s ease; }

a:hover { background-color: #0056b3; }

• Click here for initial growth rate plots
  

• Click here for analysis looking at whether we achieved our desired depth of coverages

• Click here for method to obtain confidence intervals on growth rates from IC50 measurements. Plotted alongside observed growth rate data, these confidence intervals show how well our pooled data matches predictions based off of IC50s. (Needs updates in methodology)
  

• Click here for analyses of replicate to replicate agreement between the spike in replicates. Also includes this analysis for the mutagenesis replicates. Also includes the agreement in observed vs predicted depth of coverages for all sequencing pools. Note: this analysis does not include dosage corrections that improves replicate to replicate heterogeneity.
  

• Click here showing the conformity between the growth rates in the presence of drug measured at a low MAF via FACs, sequencing, and via IC50 studies for a single mutant.
  

Session information

sessionInfo()

R version 4.0.0 (2020-04-24)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS  10.16

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.4.6    knitr_1.28      whisker_0.4     magrittr_2.0.1 
 [5] workflowr_1.6.2 R6_2.4.1        rlang_0.4.11    fastmap_1.1.0  
 [9] stringr_1.4.0   tools_4.0.0     xfun_0.31       jquerylib_0.1.4
[13] git2r_0.27.1    htmltools_0.5.2 yaml_2.2.1      digest_0.6.25  
[17] rprojroot_1.3-2 later_1.0.0     sass_0.4.1      promises_1.1.0 
[21] fs_1.4.1        glue_1.4.1      evaluate_0.14   rmarkdown_2.14 
[25] stringi_1.7.5   compiler_4.0.0  bslib_0.3.1     backports_1.1.7
[29] jsonlite_1.7.2  httpuv_1.5.2